IL_8FKP_059

3D structure

PDB id

8FKP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.85 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKP_059 not in the Motif Atlas

Geometric match to IL_5TBW_116

Geometric discrepancy: 0.1815

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8FKP|1|L3|C|4596
8FKP|1|L3|U|4597
8FKP|1|L3|C|4598
8FKP|1|L3|A|4599
8FKP|1|L3|G|4600
8FKP|1|L3|U|4601
8FKP|1|L3|A|4602
8FKP|1|L3|C|4603
*
8FKP|1|L3|G|4608
8FKP|1|L3|G|4609
8FKP|1|L3|A|4610
8FKP|1|L3|A|4611
8FKP|1|L3|C|4612
8FKP|1|L3|C|4613
8FKP|1|L3|G|4614

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain SK

Eukaryotic translation initiation factor 6