IL_8FKQ_056

3D structure

PDB id

8FKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CAAUGUU*AG

Length

9 nucleotides

Bulged bases

8FKQ|1|L3|A|2366

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKQ_056 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1607

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8FKQ|1|L3|C|2365
8FKQ|1|L3|A|2366
8FKQ|1|L3|A|2825
8FKQ|1|L3|U|2826
8FKQ|1|L3|G|2827
8FKQ|1|L3|U|2828
8FKQ|1|L3|U|2829
*
8FKQ|1|L3|A|3856
8FKQ|1|L3|G|3857

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17

Chain NE

Surfeit locus protein 6