IL_8FKQ_060

3D structure

PDB id

8FKQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State A2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.76 Å

Loop

Sequence

CUCAGUAC*GGAACCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKQ_060 not in the Motif Atlas

Homologous match to IL_5TBW_116

Geometric discrepancy: 0.1848

The information below is about IL_5TBW_116

Detailed Annotation

8x7 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_04346.8

Basepair signature

cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

15

Unit IDs

8FKQ|1|L3|C|4596
8FKQ|1|L3|U|4597
8FKQ|1|L3|C|4598
8FKQ|1|L3|A|4599
8FKQ|1|L3|G|4600
8FKQ|1|L3|U|4601
8FKQ|1|L3|A|4602
8FKQ|1|L3|C|4603
*
8FKQ|1|L3|G|4608
8FKQ|1|L3|G|4609
8FKQ|1|L3|A|4610
8FKQ|1|L3|A|4611
8FKQ|1|L3|C|4612
8FKQ|1|L3|C|4613
8FKQ|1|L3|G|4614

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain SK

Eukaryotic translation initiation factor 6