IL_8FKS_033

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FKS|1|L3|G|748, 8FKS|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_033 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1805

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FKS|1|L3|G|745
8FKS|1|L3|A|746
8FKS|1|L3|A|747
8FKS|1|L3|G|748
8FKS|1|L3|G|749
8FKS|1|L3|U|750
8FKS|1|L3|G|751
8FKS|1|L3|G|752
*
8FKS|1|L3|U|911
8FKS|1|L3|G|912
8FKS|1|L3|U|913
8FKS|1|L3|U|914
8FKS|1|L3|A|915
8FKS|1|L3|C|916
8FKS|1|L3|A|917
8FKS|1|L3|G|918
8FKS|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a