IL_8FKS_055

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8FKS|1|L3|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_055 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.1898

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8FKS|1|L3|U|1957
8FKS|1|L3|A|1958
8FKS|1|L3|U|1959
8FKS|1|L3|A|1960
8FKS|1|L3|G|1961
8FKS|1|L3|A|1962
8FKS|1|L3|C|1963
8FKS|1|L3|A|1964
8FKS|1|L3|G|1965
*
8FKS|1|L3|C|2022
8FKS|1|L3|C|2023
8FKS|1|L3|G|2024
8FKS|1|L3|A|2025
8FKS|1|L3|A|2026

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L18a

Chain SQ

mRNA turnover protein 4 homolog