IL_8FKS_080

3D structure

PDB id

8FKS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State B2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GAGC*GAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKS_080 not in the Motif Atlas

Geometric match to IL_5TBW_100

Geometric discrepancy: 0.2166

The information below is about IL_5TBW_100

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8FKS|1|L3|G|4743
8FKS|1|L3|A|4744
8FKS|1|L3|G|4745
8FKS|1|L3|C|4746
*
8FKS|1|L3|G|4954
8FKS|1|L3|A|4955
8FKS|1|L3|A|4956
8FKS|1|L3|C|4957

Current chains

Chain L3

28S rRNA

Nearby chains