IL_8FKT_034

3D structure

PDB id

8FKT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State C1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.81 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FKT|1|L3|G|748, 8FKT|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKT_034 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1768

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FKT|1|L3|G|745
8FKT|1|L3|A|746
8FKT|1|L3|A|747
8FKT|1|L3|G|748
8FKT|1|L3|G|749
8FKT|1|L3|U|750
8FKT|1|L3|G|751
8FKT|1|L3|G|752
*
8FKT|1|L3|U|911
8FKT|1|L3|G|912
8FKT|1|L3|U|913
8FKT|1|L3|U|914
8FKT|1|L3|A|915
8FKT|1|L3|C|916
8FKT|1|L3|A|917
8FKT|1|L3|G|918
8FKT|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a