IL_8FKU_033

3D structure

PDB id

8FKU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State C2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.82 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FKU|1|L3|G|748, 8FKU|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKU_033 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1782

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FKU|1|L3|G|745
8FKU|1|L3|A|746
8FKU|1|L3|A|747
8FKU|1|L3|G|748
8FKU|1|L3|G|749
8FKU|1|L3|U|750
8FKU|1|L3|G|751
8FKU|1|L3|G|752
*
8FKU|1|L3|U|911
8FKU|1|L3|G|912
8FKU|1|L3|U|913
8FKU|1|L3|U|914
8FKU|1|L3|A|915
8FKU|1|L3|C|916
8FKU|1|L3|A|917
8FKU|1|L3|G|918
8FKU|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a