IL_8FKV_033

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FKV|1|L3|G|748, 8FKV|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_033 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1785

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FKV|1|L3|G|745
8FKV|1|L3|A|746
8FKV|1|L3|A|747
8FKV|1|L3|G|748
8FKV|1|L3|G|749
8FKV|1|L3|U|750
8FKV|1|L3|G|751
8FKV|1|L3|G|752
*
8FKV|1|L3|U|911
8FKV|1|L3|G|912
8FKV|1|L3|U|913
8FKV|1|L3|U|914
8FKV|1|L3|A|915
8FKV|1|L3|C|916
8FKV|1|L3|A|917
8FKV|1|L3|G|918
8FKV|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a