IL_8FKV_052

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8FKV|1|L3|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_052 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.2031

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8FKV|1|L3|U|1957
8FKV|1|L3|A|1958
8FKV|1|L3|U|1959
8FKV|1|L3|A|1960
8FKV|1|L3|G|1961
8FKV|1|L3|A|1962
8FKV|1|L3|C|1963
8FKV|1|L3|A|1964
8FKV|1|L3|G|1965
*
8FKV|1|L3|C|2022
8FKV|1|L3|C|2023
8FKV|1|L3|G|2024
8FKV|1|L3|A|2025
8FKV|1|L3|A|2026

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L18a

Chain SQ

mRNA turnover protein 4 homolog