IL_8FKV_060

3D structure

PDB id

8FKV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.47 Å

Loop

Sequence

GUAGUAG*CGAAAC

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKV_060 not in the Motif Atlas

Homologous match to IL_8C3A_065

Geometric discrepancy: 0.1174

The information below is about IL_8C3A_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_76042.3

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW

Number of instances in this motif group

9

Unit IDs

8FKV|1|L3|G|2358
8FKV|1|L3|U|2359
8FKV|1|L3|A|2360
8FKV|1|L3|G|2361
8FKV|1|L3|U|2362
8FKV|1|L3|A|2363
8FKV|1|L3|G|2364
*
8FKV|1|L3|C|3858
8FKV|1|L3|G|3859
8FKV|1|L3|A|3860
8FKV|1|L3|A|3861
8FKV|1|L3|A|3862
8FKV|1|L3|C|3863

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17

Chain SA

60S ribosomal protein L4

Chain SJ

pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3