IL_8FKW_033

3D structure

PDB id

8FKW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State D2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FKW|1|L3|G|748, 8FKW|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKW_033 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1762

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FKW|1|L3|G|745
8FKW|1|L3|A|746
8FKW|1|L3|A|747
8FKW|1|L3|G|748
8FKW|1|L3|G|749
8FKW|1|L3|U|750
8FKW|1|L3|G|751
8FKW|1|L3|G|752
*
8FKW|1|L3|U|911
8FKW|1|L3|G|912
8FKW|1|L3|U|913
8FKW|1|L3|U|914
8FKW|1|L3|A|915
8FKW|1|L3|C|916
8FKW|1|L3|A|917
8FKW|1|L3|G|918
8FKW|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a