IL_8FKW_055
3D structure
- PDB id
- 8FKW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State D2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UAUAGACAG*CCGAA
- Length
- 14 nucleotides
- Bulged bases
- 8FKW|1|L3|A|1960
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKW_055 not in the Motif Atlas
- Homologous match to IL_5TBW_054
- Geometric discrepancy: 0.2034
- The information below is about IL_5TBW_054
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_90538.5
- Basepair signature
- cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L
- Number of instances in this motif group
- 6
Unit IDs
8FKW|1|L3|U|1957
8FKW|1|L3|A|1958
8FKW|1|L3|U|1959
8FKW|1|L3|A|1960
8FKW|1|L3|G|1961
8FKW|1|L3|A|1962
8FKW|1|L3|C|1963
8FKW|1|L3|A|1964
8FKW|1|L3|G|1965
*
8FKW|1|L3|C|2022
8FKW|1|L3|C|2023
8FKW|1|L3|G|2024
8FKW|1|L3|A|2025
8FKW|1|L3|A|2026
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L18a
- Chain SQ
- mRNA turnover protein 4 homolog
Coloring options: