IL_8FKX_033

3D structure

PDB id

8FKX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State E)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FKX|1|L3|G|748, 8FKX|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKX_033 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1783

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FKX|1|L3|G|745
8FKX|1|L3|A|746
8FKX|1|L3|A|747
8FKX|1|L3|G|748
8FKX|1|L3|G|749
8FKX|1|L3|U|750
8FKX|1|L3|G|751
8FKX|1|L3|G|752
*
8FKX|1|L3|U|911
8FKX|1|L3|G|912
8FKX|1|L3|U|913
8FKX|1|L3|U|914
8FKX|1|L3|A|915
8FKX|1|L3|C|916
8FKX|1|L3|A|917
8FKX|1|L3|G|918
8FKX|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a