IL_8FKX_088
3D structure
- PDB id
- 8FKX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State E)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.59 Å
Loop
- Sequence
- CUCAGUAC*GGAACCG
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKX_088 not in the Motif Atlas
- Geometric match to IL_5TBW_116
- Geometric discrepancy: 0.127
- The information below is about IL_5TBW_116
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_04346.8
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 15
Unit IDs
8FKX|1|L3|C|4596
8FKX|1|L3|U|4597
8FKX|1|L3|C|4598
8FKX|1|L3|A|4599
8FKX|1|L3|G|4600
8FKX|1|L3|U|4601
8FKX|1|L3|A|4602
8FKX|1|L3|C|4603
*
8FKX|1|L3|G|4608
8FKX|1|L3|G|4609
8FKX|1|L3|A|4610
8FKX|1|L3|A|4611
8FKX|1|L3|C|4612
8FKX|1|L3|C|4613
8FKX|1|L3|G|4614
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L23
- Chain LN
- 60S ribosomal protein L3
- Chain NF
- Ribosome biogenesis protein NSA2 homolog
- Chain NK
- Protein LLP homolog
- Chain SG
- 60S ribosomal protein L9
- Chain SK
- Eukaryotic translation initiation factor 6
- Chain SR
- GTP-binding protein 4
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