IL_8FKY_056

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8FKY|1|L3|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKY_056 not in the Motif Atlas

Homologous match to IL_8C3A_057

Geometric discrepancy: 0.206

The information below is about IL_8C3A_057

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8FKY|1|L3|U|1957
8FKY|1|L3|A|1958
8FKY|1|L3|U|1959
8FKY|1|L3|A|1960
8FKY|1|L3|G|1961
8FKY|1|L3|A|1962
8FKY|1|L3|C|1963
8FKY|1|L3|A|1964
8FKY|1|L3|G|1965
*
8FKY|1|L3|C|2022
8FKY|1|L3|C|2023
8FKY|1|L3|G|2024
8FKY|1|L3|A|2025
8FKY|1|L3|A|2026

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LC

60S ribosomal protein L18a

Chain SQ

mRNA turnover protein 4 homolog