IL_8FKY_064
3D structure
- PDB id
- 8FKY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nucleolar pre-60S ribosomal subunit (State F)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GUAGUAG*CGAAAC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FKY_064 not in the Motif Atlas
- Homologous match to IL_8C3A_065
- Geometric discrepancy: 0.115
- The information below is about IL_8C3A_065
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_76042.3
- Basepair signature
- cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 9
Unit IDs
8FKY|1|L3|G|2358
8FKY|1|L3|U|2359
8FKY|1|L3|A|2360
8FKY|1|L3|G|2361
8FKY|1|L3|U|2362
8FKY|1|L3|A|2363
8FKY|1|L3|G|2364
*
8FKY|1|L3|C|3858
8FKY|1|L3|G|3859
8FKY|1|L3|A|3860
8FKY|1|L3|A|3861
8FKY|1|L3|A|3862
8FKY|1|L3|C|3863
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LA
- 60S ribosomal protein L17
- Chain SA
- 60S ribosomal protein L4
- Chain SJ
- pre-rRNA 2'-O-ribose RNA methyltransferase FTSJ3
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