IL_8FKY_117

3D structure

PDB id

8FKY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State F)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

GUU*GUCAGC

Length

9 nucleotides

Bulged bases

8FKY|1|L3|G|5049

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKY_117 not in the Motif Atlas

Homologous match to IL_5TBW_132

Geometric discrepancy: 0.2105

The information below is about IL_5TBW_132

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_84428.1

Basepair signature

cWW-cWW-L-cWW-L

Number of instances in this motif group

2

Unit IDs

8FKY|1|L3|G|5000
8FKY|1|L3|U|5001
8FKY|1|L3|U|5002
*
8FKY|1|L3|G|5045
8FKY|1|L3|U|5046
8FKY|1|L3|C|5047
8FKY|1|L3|A|5048
8FKY|1|L3|G|5049
8FKY|1|L3|C|5050

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LN

60S ribosomal protein L3

Chain LP

60S ribosomal protein L31

Chain SV

Probable ribosome biogenesis protein RLP24