IL_8FKZ_013

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CUGAAUUU*AUUAGUCAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_013 not in the Motif Atlas

Geometric match to IL_4WF9_008

Geometric discrepancy: 0.1515

The information below is about IL_4WF9_008

Detailed Annotation

9x8 Sarcin-Ricin; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_93502.1

Basepair signature

cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8FKZ|1|L3|C|30
8FKZ|1|L3|U|31
8FKZ|1|L3|G|32
8FKZ|1|L3|A|33
8FKZ|1|L3|A|34
8FKZ|1|L3|U|35
8FKZ|1|L3|U|36
8FKZ|1|L3|U|37
*
8FKZ|1|L3|A|44
8FKZ|1|L3|U|45
8FKZ|1|L3|U|46
8FKZ|1|L3|A|47
8FKZ|1|L3|G|48
8FKZ|1|L3|U|49
8FKZ|1|L3|C|50
8FKZ|1|L3|A|51
8FKZ|1|L3|G|52

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain LW

60S ribosomal protein L37