IL_8FKZ_040

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FKZ|1|L3|G|748, 8FKZ|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_040 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1833

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FKZ|1|L3|G|745
8FKZ|1|L3|A|746
8FKZ|1|L3|A|747
8FKZ|1|L3|G|748
8FKZ|1|L3|G|749
8FKZ|1|L3|U|750
8FKZ|1|L3|G|751
8FKZ|1|L3|G|752
*
8FKZ|1|L3|U|911
8FKZ|1|L3|G|912
8FKZ|1|L3|U|913
8FKZ|1|L3|U|914
8FKZ|1|L3|A|915
8FKZ|1|L3|C|916
8FKZ|1|L3|A|917
8FKZ|1|L3|G|918
8FKZ|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a