IL_8FKZ_054

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GAAAG*CUAGUAGC

Length

13 nucleotides

Bulged bases

8FKZ|1|L3|A|1650, 8FKZ|1|L3|G|1654

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_054 not in the Motif Atlas

Geometric match to IL_5TBW_028

Geometric discrepancy: 0.2093

The information below is about IL_5TBW_028

Detailed Annotation

tHW-tHW cross-strand stack

Broad Annotation

No text annotation

Motif group

IL_17470.7

Basepair signature

cWW-tWW-L-R-tWH-L-cWW

Number of instances in this motif group

7

Unit IDs

8FKZ|1|L3|G|1522
8FKZ|1|L3|A|1523
8FKZ|1|L3|A|1524
8FKZ|1|L3|A|1525
8FKZ|1|L3|G|1526
*
8FKZ|1|L3|C|1648
8FKZ|1|L3|U|1649
8FKZ|1|L3|A|1650
8FKZ|1|L3|G|1651
8FKZ|1|L3|U|1652
8FKZ|1|L3|A|1653
8FKZ|1|L3|G|1654
8FKZ|1|L3|C|1655

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LW

60S ribosomal protein L37

Chain SA

60S ribosomal protein L4