IL_8FKZ_091

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

AACAAUG*CUAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_091 not in the Motif Atlas

Homologous match to IL_5TBW_074

Geometric discrepancy: 0.2551

The information below is about IL_5TBW_074

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49460.3

Basepair signature

cWW-L-R-L-R-L-cWW-L

Number of instances in this motif group

3

Unit IDs

8FKZ|1|L3|A|2832
8FKZ|1|L3|A|2833
8FKZ|1|L3|C|2834
8FKZ|1|L3|A|2835
8FKZ|1|L3|A|2836
8FKZ|1|L3|U|2837
8FKZ|1|L3|G|2838
*
8FKZ|1|L3|C|3850
8FKZ|1|L3|U|3851
8FKZ|1|L3|A|3852
8FKZ|1|L3|U|3853

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LA

60S ribosomal protein L17

Chain LN

60S ribosomal protein L3

Chain LP

60S ribosomal protein L31