IL_8FKZ_098

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8FKZ|1|L3|A|3663, 8FKZ|1|L3|U|3679, 8FKZ|1|L3|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_098 not in the Motif Atlas

Homologous match to IL_8C3A_088

Geometric discrepancy: 0.1051

The information below is about IL_8C3A_088

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8FKZ|1|L3|C|3660
8FKZ|1|L3|G|3661
8FKZ|1|L3|A|3662
8FKZ|1|L3|A|3663
8FKZ|1|L3|G|3664
8FKZ|1|L3|G|3665
*
8FKZ|1|L3|U|3677
8FKZ|1|L3|G|3678
8FKZ|1|L3|U|3679
8FKZ|1|L3|U|3680
8FKZ|1|L3|G|3681
8FKZ|1|L3|A|3682
8FKZ|1|L3|C|3683
8FKZ|1|L3|G|3684

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LX

60S ribosomal protein L37a

Chain SF

60S ribosomal protein L8