IL_8FKZ_101

3D structure

PDB id

8FKZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State G)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.04 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8FKZ|1|L3|A|4348, 8FKZ|1|L3|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FKZ_101 not in the Motif Atlas

Geometric match to IL_4V88_392

Geometric discrepancy: 0.1298

The information below is about IL_4V88_392

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8FKZ|1|L3|G|4347
8FKZ|1|L3|A|4348
8FKZ|1|L3|C|4349
8FKZ|1|L3|C|4350
*
8FKZ|1|L3|G|4364
8FKZ|1|L3|C|4365

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain LK

60S ribosomal protein L27a