IL_8FL0_041

3D structure

PDB id

8FL0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nucleolar pre-60S ribosomal subunit (State H)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.91 Å

Loop

Sequence

CCUUGAAG*UGGAG

Length

13 nucleotides

Bulged bases

8FL0|1|L3|U|2305

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL0_041 not in the Motif Atlas

Homologous match to IL_8C3A_063

Geometric discrepancy: 0.1199

The information below is about IL_8C3A_063

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_70923.5

Basepair signature

cWW-cWW-tSS-tSH-tHS-cWW-tHS

Number of instances in this motif group

32

Unit IDs

8FL0|1|L3|C|2302
8FL0|1|L3|C|2303
8FL0|1|L3|U|2304
8FL0|1|L3|U|2305
8FL0|1|L3|G|2306
8FL0|1|L3|A|2307
8FL0|1|L3|A|2308
8FL0|1|L3|G|2309
*
8FL0|1|L3|U|2329
8FL0|1|L3|G|2330
8FL0|1|L3|G|2331
8FL0|1|L3|A|2332
8FL0|1|L3|G|2333

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LQ

60S ribosomal protein L32