IL_8FL2_114

3D structure

PDB id

8FL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

UG*UAAA

Length

6 nucleotides

Bulged bases

8FL2|1|L3|A|3746, 8FL2|1|L3|A|3747

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL2_114 not in the Motif Atlas

Geometric match to IL_5TBW_085

Geometric discrepancy: 0.131

The information below is about IL_5TBW_085

Detailed Annotation

Major groove intercalation

Broad Annotation

Major groove intercalation

Motif group

IL_82107.1

Basepair signature

cWW-cWW

Number of instances in this motif group

34

Unit IDs

8FL2|1|L3|U|3704
8FL2|1|L3|G|3705
*
8FL2|1|L3|U|3745
8FL2|1|L3|A|3746
8FL2|1|L3|A|3747
8FL2|1|L3|A|3748

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NC

Nucleolar GTP-binding protein 2

Chain NT

Protein SDA1 homolog

Chain SF

60S ribosomal protein L8