IL_8FL2_141
3D structure
- PDB id
- 8FL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State I1)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- U(PSU)GA(PSU)U*AA(PSU)ACA
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FL2_141 not in the Motif Atlas
- Geometric match to IL_4EYA_005
- Geometric discrepancy: 0.3824
- The information below is about IL_4EYA_005
- Detailed Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Broad Annotation
- Tandem non-canonical cWW pairs with near WC pairs
- Motif group
- IL_82292.2
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8FL2|1|L3|U|4295
8FL2|1|L3|PSU|4296
8FL2|1|L3|G|4297
8FL2|1|L3|A|4298
8FL2|1|L3|PSU|4299
8FL2|1|L3|U|4300
*
8FL2|1|L3|A|4310
8FL2|1|L3|A|4311
8FL2|1|L3|PSU|4312
8FL2|1|L3|A|4313
8FL2|1|L3|C|4314
8FL2|1|L3|A|4315
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LE
- 60S ribosomal protein L21
- Chain NT
- Protein SDA1 homolog
- Chain SB
- 60S ribosomal protein L5
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