IL_8FL3_029

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GCCCG*CC

Length

7 nucleotides

Bulged bases

8FL3|1|L3|C|501, 8FL3|1|L3|C|502, 8FL3|1|L3|C|503

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL3_029 not in the Motif Atlas

Geometric match to IL_1R3E_001

Geometric discrepancy: 0.1872

The information below is about IL_1R3E_001

Detailed Annotation

Multiple bulged bases

Broad Annotation

No text annotation

Motif group

IL_05670.1

Basepair signature

cWW-cWW

Number of instances in this motif group

9

Unit IDs

8FL3|1|L3|G|500
8FL3|1|L3|C|501
8FL3|1|L3|C|502
8FL3|1|L3|C|503
8FL3|1|L3|G|504
*
8FL3|1|L3|C|654
8FL3|1|L3|C|655

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SA

60S ribosomal protein L4