IL_8FL3_063

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

GCC*GAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL3_063 not in the Motif Atlas

Geometric match to IL_3ICQ_003

Geometric discrepancy: 0.182

The information below is about IL_3ICQ_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_70707.3

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

70

Unit IDs

8FL3|1|L3|G|1761
8FL3|1|L3|C|1762
8FL3|1|L3|C|1763
*
8FL3|1|L3|G|1769
8FL3|1|L3|A|1770
8FL3|1|L3|U|1771

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NT

Protein SDA1 homolog

Chain NV

WD repeat-containing protein 18