IL_8FL3_130

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

AGU*A(OMC)U

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL3_130 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1149

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

8FL3|1|L3|A|3966
8FL3|1|L3|G|3967
8FL3|1|L3|U|3968
*
8FL3|1|L3|A|4053
8FL3|1|L3|OMC|4054
8FL3|1|L3|U|4055

Current chains

Chain L3

28S rRNA

Nearby chains

Chain BB

60S ribosomal protein L10a

Chain NT

Protein SDA1 homolog

Chain NY

Proline-, glutamic acid- and leucine-rich protein 1