IL_8FL3_179
3D structure
- PDB id
- 8FL3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State I2)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.53 Å
Loop
- Sequence
- GUUAGUAC*GGAAUAC
- Length
- 15 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FL3_179 not in the Motif Atlas
- Geometric match to IL_7A0S_007
- Geometric discrepancy: 0.0981
- The information below is about IL_7A0S_007
- Detailed Annotation
- 8x7 Sarcin-Ricin; G-bulge
- Broad Annotation
- Sarcin-Ricin; G-bulge
- Motif group
- IL_62167.2
- Basepair signature
- cWW-cWW-tSH-tHH-cSH-tWH-tHS-cWW
- Number of instances in this motif group
- 19
Unit IDs
8FL3|1|L4|G|71
8FL3|1|L4|U|72
8FL3|1|L4|U|73
8FL3|1|L4|A|74
8FL3|1|L4|G|75
8FL3|1|L4|U|76
8FL3|1|L4|A|77
8FL3|1|L4|C|78
*
8FL3|1|L4|G|98
8FL3|1|L4|G|99
8FL3|1|L4|A|100
8FL3|1|L4|A|101
8FL3|1|L4|U|102
8FL3|1|L4|A|103
8FL3|1|L4|C|104
Current chains
- Chain L4
- 5S rRNA
Nearby chains
- Chain LC
- 60S ribosomal protein L18a
- Chain LE
- 60S ribosomal protein L21
- Chain NB
- Guanine nucleotide-binding protein-like 3
- Chain NZ
- Coiled-coil domain-containing protein 86
- Chain SB
- 60S ribosomal protein L5
- Chain SD
- 60S ribosomal protein L7
Coloring options: