IL_8FL3_199

3D structure

PDB id

8FL3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State I2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.53 Å

Loop

Sequence

U(PSU)GA*(PSU)ACA

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL3_199 not in the Motif Atlas

Homologous match to IL_8C3A_109

Geometric discrepancy: 0.2836

The information below is about IL_8C3A_109

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_67085.2

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

55

Unit IDs

8FL3|1|L3|U|4295
8FL3|1|L3|PSU|4296
8FL3|1|L3|G|4297
8FL3|1|L3|A|4298
*
8FL3|1|L3|PSU|4312
8FL3|1|L3|A|4313
8FL3|1|L3|C|4314
8FL3|1|L3|A|4315

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LE

60S ribosomal protein L21

Chain NT

Protein SDA1 homolog

Chain SB

60S ribosomal protein L5