IL_8FL7_036

3D structure

PDB id

8FL7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FL7|1|L3|G|748, 8FL7|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL7_036 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1698

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FL7|1|L3|G|745
8FL7|1|L3|A|746
8FL7|1|L3|A|747
8FL7|1|L3|G|748
8FL7|1|L3|G|749
8FL7|1|L3|U|750
8FL7|1|L3|G|751
8FL7|1|L3|G|752
*
8FL7|1|L3|U|911
8FL7|1|L3|G|912
8FL7|1|L3|U|913
8FL7|1|L3|U|914
8FL7|1|L3|A|915
8FL7|1|L3|C|916
8FL7|1|L3|A|917
8FL7|1|L3|G|918
8FL7|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a