3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
GCG*CC
Length
5 nucleotides
Bulged bases
8FL9|1|L1|C|150
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_007 not in the Motif Atlas
Homologous match to IL_5TBW_002
Geometric discrepancy: 0.2392
The information below is about IL_5TBW_002
Detailed Annotation
Single bulged C
Broad Annotation
No text annotation
Motif group
IL_61258.13
Basepair signature
cWW-L-cWW
Number of instances in this motif group
40

Unit IDs

8FL9|1|L1|G|149
8FL9|1|L1|C|150
8FL9|1|L1|G|151
*
8FL9|1|L3|C|6
8FL9|1|L3|C|7

Current chains

Chain L1
5.8S rRNA
Chain L3
28S rRNA

Nearby chains

Chain L9
60S ribosomal protein L15
Chain LH
60S ribosomal protein L23a
Chain SE
60S ribosomal protein L7a

Coloring options:


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