IL_8FL9_037

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GG*CAC

Length

5 nucleotides

Bulged bases

8FL9|1|L3|A|1238

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_037 not in the Motif Atlas

Geometric match to IL_2VPL_002

Geometric discrepancy: 0.2313

The information below is about IL_2VPL_002

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_14190.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

160

Unit IDs

8FL9|1|L3|G|1073
8FL9|1|L3|G|1074
*
8FL9|1|L3|C|1237
8FL9|1|L3|A|1238
8FL9|1|L3|C|1239

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LM

60S ribosomal protein L29

Chain SA

60S ribosomal protein L4

Chain SC

60S ribosomal protein L6

Chain SD

60S ribosomal protein L7