3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
GGAUC*GCGCAC
Length
11 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_046 not in the Motif Atlas
Geometric match to IL_4V9F_018
Geometric discrepancy: 0.289
The information below is about IL_4V9F_018
Detailed Annotation
Triple sheared related
Broad Annotation
Triple sheared
Motif group
IL_67427.1
Basepair signature
cWW-cWW-L-R-L-R-cWW-cWW
Number of instances in this motif group
2

Unit IDs

8FL9|1|L3|G|1425
8FL9|1|L3|G|1426
8FL9|1|L3|A|1427
8FL9|1|L3|U|1428
8FL9|1|L3|C|1429
*
8FL9|1|L3|G|1455
8FL9|1|L3|C|1456
8FL9|1|L3|G|1457
8FL9|1|L3|C|1458
8FL9|1|L3|A|1459
8FL9|1|L3|C|1460

Current chains

Chain L3
28S rRNA

Nearby chains

Chain LB
60S ribosomal protein L18
Chain LM
60S ribosomal protein L29

Coloring options:


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