IL_8FL9_054

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_054 not in the Motif Atlas

Homologous match to IL_8C3A_033

Geometric discrepancy: 0.1324

The information below is about IL_8C3A_033

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8FL9|1|L3|C|1551
8FL9|1|L3|G|1552
8FL9|1|L3|A|1553
8FL9|1|L3|A|1554
8FL9|1|L3|G|1555
*
8FL9|1|L3|U|1572
8FL9|1|L3|G|1573
8FL9|1|L3|G|1574
8FL9|1|L3|A|1575
8FL9|1|L3|G|1576

Current chains

Chain L3

28S rRNA

Nearby chains

Chain LD

60S ribosomal protein L19

Chain LX

60S ribosomal protein L37a

Chain SF

60S ribosomal protein L8