IL_8FL9_057

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

G(OMG)G*UAAUC

Length

8 nucleotides

Bulged bases

8FL9|1|L3|A|1637, 8FL9|1|L3|A|1638

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_057 not in the Motif Atlas

Homologous match to IL_8C3A_036

Geometric discrepancy: 0.0849

The information below is about IL_8C3A_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_90991.8

Basepair signature

cWW-cWW

Number of instances in this motif group

6

Unit IDs

8FL9|1|L3|G|1624
8FL9|1|L3|OMG|1625
8FL9|1|L3|G|1626
*
8FL9|1|L3|U|1636
8FL9|1|L3|A|1637
8FL9|1|L3|A|1638
8FL9|1|L3|U|1639
8FL9|1|L3|C|1640

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L9

60S ribosomal protein L15

Chain LA

60S ribosomal protein L17

Chain LW

60S ribosomal protein L37

Chain SF

60S ribosomal protein L8

Chain SR

GTP-binding protein 4