IL_8FL9_064

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

AC(PSU)U*AACU

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_064 not in the Motif Atlas

Geometric match to IL_6AZ4_001

Geometric discrepancy: 0.1721

The information below is about IL_6AZ4_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_69145.1

Basepair signature

cWW-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8FL9|1|L3|A|1858
8FL9|1|L3|C|1859
8FL9|1|L3|PSU|1860
8FL9|1|L3|U|1861
*
8FL9|1|L3|A|1873
8FL9|1|L3|A|1874
8FL9|1|L3|C|1875
8FL9|1|L3|U|1876

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L4

5S ribosomal RNA; 5S rRNA

Chain LE

60S ribosomal protein L21

Chain LM

60S ribosomal protein L29