3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
CCUUGAAG*UGGAG
Length
13 nucleotides
Bulged bases
8FL9|1|L3|U|2305
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_079 not in the Motif Atlas
Homologous match to IL_8C3A_063
Geometric discrepancy: 0.1405
The information below is about IL_8C3A_063
Detailed Annotation
Kink-turn
Broad Annotation
No text annotation
Motif group
IL_70923.5
Basepair signature
cWW-cWW-tSS-tSH-tHS-cWW-tHS
Number of instances in this motif group
32

Unit IDs

8FL9|1|L3|C|2302
8FL9|1|L3|C|2303
8FL9|1|L3|U|2304
8FL9|1|L3|U|2305
8FL9|1|L3|G|2306
8FL9|1|L3|A|2307
8FL9|1|L3|A|2308
8FL9|1|L3|G|2309
*
8FL9|1|L3|U|2329
8FL9|1|L3|G|2330
8FL9|1|L3|G|2331
8FL9|1|L3|A|2332
8FL9|1|L3|G|2333

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L1
5.8S ribosomal RNA; 5.8S rRNA
Chain LA
60S ribosomal protein L17
Chain LI
60S ribosomal protein L26
Chain LQ
60S ribosomal protein L32
Chain SA
60S ribosomal protein L4

Coloring options:


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