IL_8FL9_109

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CUG*CG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_109 not in the Motif Atlas

Geometric match to IL_5WT1_001

Geometric discrepancy: 0.2065

The information below is about IL_5WT1_001

Detailed Annotation

Stack outside cWW

Broad Annotation

Stack outside cWW

Motif group

IL_77710.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

26

Unit IDs

8FL9|1|L3|C|3708
8FL9|1|L3|U|3709
8FL9|1|L3|G|3710
*
8FL9|1|L3|C|3741
8FL9|1|L3|G|3742

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SF

60S ribosomal protein L8