IL_8FL9_110

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GAAUG*CGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_110 not in the Motif Atlas

Geometric match to IL_4PDB_001

Geometric discrepancy: 0.218

The information below is about IL_4PDB_001

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_36516.3

Basepair signature

cWW-cWW-cSH-cWW-L

Number of instances in this motif group

7

Unit IDs

8FL9|1|L3|G|3710
8FL9|1|L3|A|3711
8FL9|1|L3|A|3712
8FL9|1|L3|U|3713
8FL9|1|L3|G|3714
*
8FL9|1|L3|C|3739
8FL9|1|L3|G|3740
8FL9|1|L3|C|3741

Current chains

Chain L3

28S rRNA

Nearby chains