IL_8FL9_116

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCC*G(OMG)G

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_116 not in the Motif Atlas

Geometric match to IL_2O3X_001

Geometric discrepancy: 0.1262

The information below is about IL_2O3X_001

Detailed Annotation

Stack and bulge

Broad Annotation

Stack and bulge

Motif group

IL_61702.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

6

Unit IDs

8FL9|1|L3|C|3909
8FL9|1|L3|C|3910
8FL9|1|L3|C|3911
*
8FL9|1|L3|G|4391
8FL9|1|L3|OMG|4392
8FL9|1|L3|G|4393

Current chains

Chain L3

28S rRNA

Nearby chains

Chain SA

60S ribosomal protein L4

Chain SR

GTP-binding protein 4