IL_8FL9_127

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8FL9|1|L3|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_127 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2719

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8FL9|1|L3|G|4347
8FL9|1|L3|A|4348
8FL9|1|L3|C|4349
8FL9|1|L3|C|4350
*
8FL9|1|L3|G|4364
8FL9|1|L3|C|4365

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L6

60S ribosomal protein L13

Chain LB

60S ribosomal protein L18

Chain LK

60S ribosomal protein L27a

Chain LV

60S ribosomal protein L36a