3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
CU*AACG
Length
6 nucleotides
Bulged bases
8FL9|1|L3|A|4518, 8FL9|1|L3|C|4519
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_131 not in the Motif Atlas
Geometric match to IL_4V9F_088
Geometric discrepancy: 0.0888
The information below is about IL_4V9F_088
Detailed Annotation
Multiple bulged bases
Broad Annotation
No text annotation
Motif group
IL_44609.1
Basepair signature
cWW-cWW
Number of instances in this motif group
28

Unit IDs

8FL9|1|L3|C|4458
8FL9|1|L3|U|4459
*
8FL9|1|L3|A|4517
8FL9|1|L3|A|4518
8FL9|1|L3|C|4519
8FL9|1|L3|G|4520

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L7
60S ribosomal protein L13a
Chain LG
60S ribosomal protein L23
Chain LN
60S ribosomal protein L3
Chain SR
GTP-binding protein 4

Coloring options:


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