IL_8FL9_140

3D structure

PDB id

8FL9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State J3)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.75 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8FL9|1|L3|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FL9_140 not in the Motif Atlas

Geometric match to IL_4WF9_054

Geometric discrepancy: 0.379

The information below is about IL_4WF9_054

Detailed Annotation

Other IL

Broad Annotation

Other IL

Motif group

IL_74317.1

Basepair signature

cWW-tWH-tHS-cWW

Number of instances in this motif group

8

Unit IDs

8FL9|1|L3|C|4582
8FL9|1|L3|C|4583
8FL9|1|L3|A|4584
8FL9|1|L3|U|4585
*
8FL9|1|L3|A|4717
8FL9|1|L3|G|4718
8FL9|1|L3|G|4719
8FL9|1|L3|C|4720
8FL9|1|L3|G|4721

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L7

60S ribosomal protein L13a

Chain LN

60S ribosomal protein L3