3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
UCCUG*CGUCA
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_152 not in the Motif Atlas
Geometric match to IL_8S95_002
Geometric discrepancy: 0.3456
The information below is about IL_8S95_002
Detailed Annotation
Triple non-canonical cWW pairs
Broad Annotation
No text annotation
Motif group
IL_49751.4
Basepair signature
cWW-cWW-cWW-cWW-cWW
Number of instances in this motif group
16

Unit IDs

8FL9|1|L3|U|4885
8FL9|1|L3|C|4886
8FL9|1|L3|C|4887
8FL9|1|L3|U|4888
8FL9|1|L3|G|4889
*
8FL9|1|L3|C|4930
8FL9|1|L3|G|4931
8FL9|1|L3|U|4932
8FL9|1|L3|C|4933
8FL9|1|L3|A|4934

Current chains

Chain L3
28S rRNA

Nearby chains

Chain L7
60S ribosomal protein L13a
Chain L8
60S ribosomal protein L14
Chain SC
60S ribosomal protein L6

Coloring options:


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