3D structure

PDB id
8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Human nuclear pre-60S ribosomal subunit (State J3)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.75 Å

Loop

Sequence
GGAA*U(OMC)
Length
6 nucleotides
Bulged bases
None detected
QA status
Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8FL9_178 not in the Motif Atlas
Geometric match to IL_4WF9_064
Geometric discrepancy: 0.1595
The information below is about IL_4WF9_064
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
No text annotation
Motif group
IL_74641.1
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
32

Unit IDs

8FL9|1|L3|G|2847
8FL9|1|L3|G|2848
8FL9|1|L3|A|2849
8FL9|1|L3|A|2850
*
8FL9|1|L3|U|3840
8FL9|1|L3|OMC|3841

Current chains

Chain L3
28S rRNA

Nearby chains

Chain LG
60S ribosomal protein L23
Chain LN
60S ribosomal protein L3
Chain NP
Zinc finger protein 593

Coloring options:


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