IL_8FL9_178
3D structure
- PDB id
- 8FL9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human nuclear pre-60S ribosomal subunit (State J3)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.75 Å
Loop
- Sequence
- GGAA*U(OMC)
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8FL9_178 not in the Motif Atlas
- Geometric match to IL_4WF9_064
- Geometric discrepancy: 0.1595
- The information below is about IL_4WF9_064
- Detailed Annotation
- Major groove platform; stack outside cWW
- Broad Annotation
- No text annotation
- Motif group
- IL_74641.1
- Basepair signature
- cWW-tSH-cWW-L
- Number of instances in this motif group
- 32
Unit IDs
8FL9|1|L3|G|2847
8FL9|1|L3|G|2848
8FL9|1|L3|A|2849
8FL9|1|L3|A|2850
*
8FL9|1|L3|U|3840
8FL9|1|L3|OMC|3841
Current chains
- Chain L3
- 28S rRNA
Nearby chains
- Chain LG
- 60S ribosomal protein L23
- Chain LN
- 60S ribosomal protein L3
- Chain NP
- Zinc finger protein 593
Coloring options: