IL_8FLA_040

3D structure

PDB id

8FLA (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K1)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.63 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8FLA|1|L3|G|748, 8FLA|1|L3|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLA_040 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1655

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8FLA|1|L3|G|745
8FLA|1|L3|A|746
8FLA|1|L3|A|747
8FLA|1|L3|G|748
8FLA|1|L3|G|749
8FLA|1|L3|U|750
8FLA|1|L3|G|751
8FLA|1|L3|G|752
*
8FLA|1|L3|U|911
8FLA|1|L3|G|912
8FLA|1|L3|U|913
8FLA|1|L3|U|914
8FLA|1|L3|A|915
8FLA|1|L3|C|916
8FLA|1|L3|A|917
8FLA|1|L3|G|918
8FLA|1|L3|C|919

Current chains

Chain L3

28S rRNA

Nearby chains

Chain L8

60S ribosomal protein L14

Chain LC

60S ribosomal protein L18a

Chain NR

Translation machinery-associated protein 16