IL_8FLB_073

3D structure

PDB id

8FLB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human nuclear pre-60S ribosomal subunit (State K2)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.55 Å

Loop

Sequence

UAUAGACAG*CCGAA

Length

14 nucleotides

Bulged bases

8FLB|1|L3|A|1960

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8FLB_073 not in the Motif Atlas

Homologous match to IL_5TBW_054

Geometric discrepancy: 0.16

The information below is about IL_5TBW_054

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.5

Basepair signature

cWW-tSS-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

8FLB|1|L3|U|1957
8FLB|1|L3|A|1958
8FLB|1|L3|U|1959
8FLB|1|L3|A|1960
8FLB|1|L3|G|1961
8FLB|1|L3|A|1962
8FLB|1|L3|C|1963
8FLB|1|L3|A|1964
8FLB|1|L3|G|1965
*
8FLB|1|L3|C|2022
8FLB|1|L3|C|2023
8FLB|1|L3|G|2024
8FLB|1|L3|A|2025
8FLB|1|L3|A|2026

Current chains

Chain L3

28S rRNA

Nearby chains

Chain NR

Translation machinery-associated protein 16

Chain SQ

mRNA turnover protein 4 homolog